Your problem sounds like it might be something to do with encrypted passwords - I see this when doing manual rehosts:
- Fix the InfoEngine LDAP Adapters Encrypted password issue that has occurred since 10.1:
xconfmanager -t codebase/WEB-INF/mapCredentials.txt -s "mapcredentials.admin.adapters=com.ricardo.Ldap^cn=Manager^<Password>"
xconfmanager -t codebase/WEB-INF/mapCredentials.txt --add "mapcredentials.admin.adapters=com.ricardo.windchill-test.ldap-pending^cn=Manager^<Password>"
xconfmanager -t codebase/WEB-INF/mapCredentials.txt --add "mapcredentials.admin.adapters=com.ricardo.EnterpriseLdap^<username>^<Password>"
xconfmanager -p
You will need to supply your own usernames and passwords and replace the adapter names with the ones to suit your system.
Hope that helps.
Rgds
Gary